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Justin Amakor
2022-2023
Home University: UCLA
Class: senior
Major: Molecular, Cell, and Developmental Biology
Faculty Mentor: Dr. Melissa Spencer
Justin is a rising senior at UCLA majoring in Molecular, Cell, and Developmental Biology. Justin started in the Spencer Lab in the summer of 2022. There, Justin studies the influence of macrophage-specific Spp1 on the dystrophic phenotype and cell-cell interactions in the dystrophic muscle niche. This is all with the aim of better understanding Duchenne Muscular Dystrophy (DMD) and the mechanisms that increase its severity.
Duchenne muscular dystrophy (DMD) is an inherited degenerative muscular disorder caused by mutations in the DMD gene. Mutations in the DMD gene cause a loss of function of dystrophin, a protein essential for muscle cell membrane integrity via the dystrophin-glycoprotein complex (DGC). As a result, muscle cells are prone to chronic injury, dysregulated inflammation, and fibrosis. As an Amgen scholar, Justin will study DMD using muscular dystrophy X-linked mice (mdx mice), which are mice with a dystrophic background because of a point mutation in the DMD gene that causes them to express non-function dystrophin. This model will be used alongside the macrophage conditional knockout mouse line (MϕcKO) created by the Spencer Lab. The ablation of macrophage osteopontin has led to the disappearance of two stromal cell subclusters. The two subclusters were transcriptionally characterized and found to be novel stromal cell populations, which the Spencer lab refers to as ApoD(+) and Cxcl13(+) stromal cells. Using immunofluorescence techniques, Justin will find out if macrophage osteopontin is responsible for the viability of these cells and through which mechanism this happens. Justin will also characterize the phenotypic effects of missing ApoD(+) and Cxcl13(+) stromal cells on the mdx mice muscles. The preliminary characterization will involve using intracellular fat staining to uncover any difference in the amount of intracellular fat in MϕcKO compared to the control mice.
Justin is exceptionally grateful to everyone at the Spencer Lab for their kindness, patience, and helpfulness. This is especially so for Justin’s graduate student mentor, Raquel Aragón, and his PI, Dr. Melissa Spencer. Justin would also like to thank the Amgen Foundation for this opportunity and their support in his journey to become a physician-scientist.
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Zachary Caterer
2022-2023
Home University: University of Wisconsin-Eau Claire
Class: senior
Major: Molecular Biology, Applied Mathematics and Statistics
Faculty Mentor: Dr. Mireille Kamariza
Zachary Caterer, an undergraduate student at the University of Wisconsin-Eau Claire (UWEC), is focused on the development and integration of novel imaging techniques, machine learning, and artificial intelligence to enhance diagnostic accuracy and improve point-of-care practices. At UWEC, he contributed to a project in the Department of Biomedical Engineering and Materials Science and Department of Computer Science, where he assisted in developing deep learning algorithms for automated and precise detection and classification of laser-based spectroscopic images. This advancement has the potential to revolutionize diagnostic processes, aiming to enhance patient treatment and outcomes.
As an Amgen Scholar, Zachary is currently working on integrating machine learning and fluorescence microscopy techniques to create an automated system for the accurate detection of Mycobacterium tuberculosis (Mtb) in patient smears. By utilizing environment-sensitive probes and the low-cost fluorescence microscope Octopi, his objective is to streamline the diagnostic process and improve the efficiency and reliability of TB detection. The project involves investigating optimal parameters for probe detection, distinguishing between live and dead cells, assessing drug resistance, and detecting Mtb cells in human samples. Through this research, Zachary aims to contribute to global efforts in combating tuberculosis and ultimately enhance patient care.
Zachary extends his sincere gratitude to the Amgen Foundation and The Kamariza Lab for the invaluable opportunity to develop and execute his project, further refining his skills as a researcher.
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Arden Clauss
2022-2023
Home University: Carleton College
Class: senior
Major: Chemistry
Faculty Mentor: Dr. José Rodríguez
Arden is a rising senior chemistry major at Carleton College. He greatly values the time he spends with his peers exploring scientific understanding, and is particularly interested in physical and analytical chemistry and biochemistry and their applications in advancing society.
As part of the Amgen Scholars Program at UCLA, Arden is conducting research in the lab of Dr. José Rodríguez in the Department of Chemistry and Biochemistry. The Rodríguez lab studies structural biology with computational, biochemical, and biophysical approaches using imaging methods such as electron microscopy, x-ray diffraction, and electron diffraction. Arden is using these diffraction methods to explore structural aspects of binding in enzyme inhibition. Papain is a cysteine protease used as a model system for numerous analogous enzymes including the particularly relevant PLpro domain of Nsp3 from SARS-CoV-2, which is vital for viral replication. Inhibition of papain is possible with small molecules such as E64 that irreversibly bind the thiol group at the active site characteristic of these enzymes. Examining binding of E64 derivatives is of interest for selective inhibition of cysteine proteases, which has potential as a therapeutic tool in targeting viral and neurodegenerative disease pathways.
Arden would like to thank his mentors Professor Rodríguez and Niko Vlahakis for their invaluable guidance, as well as UCLA and the Amgen Scholars Program for providing him with this opportunity to grow as a scientist.
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Christina Deng
2022-2023
Home University: UCLA
Class: senior
Major: Molecular, Cell, and Developmental Biology
Faculty Mentor: Dr. Rachelle Crosbie
Christina is a rising senior at UCLA majoring in Molecular, Cell, and Developmental Biology. She has worked in Dr. Crosbie’s lab since December 2021, where she studies how the mechanotransduction protein YAP can alter inflammatory macrophage behavior in Duchenne muscular dystrophy (DMD), enhancing overall disease pathology.
DMD is a rare, X-linked disorder that currently has no cure and is ultimately fatal. Patients experience progressive muscle weakness and muscle degeneration, as well as chronic inflammation and muscle fibrosis due to elevated macrophage activity. Muscle fibrosis results in elevated extracellular matrix (ECM) stiffness, activating mechanosensing proteins such as YAP, which normally regulates cell proliferation, but also has a potential role in polarizing macrophages towards an inflammatory phenotype in stiffer environments. Christina’s project with the UCLA Amgen Scholars Program seeks to better understand how macrophage cytotoxic behavior is altered when YAP is activated in macrophages by the stiffer, fibrotic environment of DMD muscle. Using cytotoxicity assays and immunofluorescence techniques, Christina hopes to better understand mechanisms of immunomodulation and macrophage behavior in DMD.
Christina would like to thank her graduate student mentors, Pranav Kannan and Daniel Helzer, and Dr. Rachelle Crosbie for their incredible mentorship and support, as well as the Amgen Foundation for this amazing opportunity to continue her growth as a scientist.
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Charlotte George
2022-2023
Home University: Wesleyan University
Class: senior
Major: Molecular Biology and Biochemistry, Neuroscience and Behavior
Faculty Mentor: Dr. Amjad Askary
Charlotte is a rising senior at Wesleyan University double majoring in Molecular Biology and
Biochemistry, and Neuroscience and Behavior. At Wesleyan, she works in Dr. MacQueen’s lab, using
budding yeast as a model organism for studying the dynamics of meiotic proteins involved in the structure
and function of the synaptonemal complex.
As a UCLA Amgen Scholar, Charlotte works in Dr. Askary’s lab in the Molecular, Cell and
Developmental Biology Department, and this lab focuses on creating and utilizing new or modified
molecular tools to understand embryonic development of the mammalian retina with the goal of using this
understanding to develop better therapeutic strategies and molecular diagnostics for neurodegenerative
disorders of the eye. Charlotte is using a modified single molecule fluorescent in situ hybridization
(smFISH) procedure developed by a member of the Askary Lab to visualize the presence and localization
of the expression of 33 different genes of RPCs in embryonic mouse tissue with the hopes to use this
combined spatial and transcriptional information to characterize subtypes of RPCs that could inform on
what biases an RPC to assume a certain cell fate. This would provide further insight into the development
of the retina, as well as a means of generating a reliable source of different retinal cell types to use for
studying treatment of retinal damage.
Charlotte would like to thank Dr. Askary, her mentor Pratiti Dasgupta, lab manager Yuka McGrath, and
the other members of the Askary Lab for their guidance, support, and encouragement, as well as the
Amgen Foundation for this amazing opportunity!
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Miriam Lepiz
2022-2023
Home University: UC Irvine
Class: senior
Major: Microbiology and Immunology
Faculty Mentor: Dr. Hong Zhou
Miriam Lepiz is a rising senior at UC Irvine conducting research in the Rodriguez Verdugo lab in the Department of Ecology and Evolutionary Biology. Her project is focused on increasing the realism and diversity of a three-strain synthetic microbial community representative of the Loma Ridge site in Irvine Ca.
As a UCLA Amgen scholar, Miriam is conducting research in Dr. Hong Zhou’s lab in the Department of Microbiology, Immunology, and Molecular Genetics and the Electron Imaging Center for Nanomachines. The Zhou lab focuses on 3D structural studies of biological complexes using Cryo-EM and Cryo-ET.
For the summer, she has focused on constructing an atomic model of the Mammalian Reovirus (MRV) using a cryo-em map. MRV is a segmented dsRNA virus with two capsid layers, belonging to the Reovirdae family. It is known to be a gastrointestinal virus capable of infecting all mammals but has low pathogenicity towards humans. This virus is studied due to its oncolytic function and to be used as a model for more pathogenic viruses that belong to the Reovirdae family. An atomic model of MRV will provide a high enough resolution to study the interactions within the intermediate particles of the virus during viral replication and assembly.
Miriam would like to thank Dr. Hong Zhou and Dr. Xiaoyu Liu for their incredible mentorship and extensive support. She would also like to thank the Amgen Foundation for providing her with the opportunity to grow as a researcher.
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Marcos Moliné
2022-2023
Home University: University of California, San Diego
Class: junior
Major: Neurobiology
Faculty Mentor: Dr. Richard Staba
Marcos Moliné is a rising third-year neurobiology student at UCSD, working in the Molina Lab at UCSD Health, where they study mitochondrial dysfunction and its relation to healthy aging.
As part of the UCLA Amgen Scholars program, Marcos is working in Dr. Richard Staba’s Lab. His project focuses on analyzing the effects of the potential drug treatments, deferiprone and levetiracetam, in preventing epileptogenesis after traumatic brain injury (TBI).
Because the onset of epilepsy can take months to years to occur in humans after TBI, Marcos’ project uses rats as an animal model. TBI is induced, and high frequency oscillations, interictal spikes, and seizures are monitored as biomarkers during the acute period (14 days) following TBI. Currently, anti-seizure medications such as levetiracetam are prescribed to epileptic patients to treat their seizures. However, this drug only prevents symptoms. Therefore, there is a need for a treatment to prevent epileptogenesis after TBI, especially considering that 15-50% of patients who experience TBI develop epilepsy. Deferiprone has been identified as a possible anti-epileptogenic treatment because it is an iron chelator and will metabolize potentially harmful iron released in the brain due to bleeding. The lab hypothesizes that a combination of deferiprone and levetiracetam will reduce the observed biomarkers, indicating increased potential as an anti-epileptogenic treatment, which can be further studied in clinical trials.
Marcos is very grateful to Dr. Richard Staba and Dr. Cesar Santana-Gomez for their mentorship this summer, as well as to the Amgen Foundation and UCLA for giving him this opportunity.
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Truman Natividad
2022-2023
Home University: University of California, Santa Cruz
Class: senior
Major: Molecular, Cellular, & Developmental Biology
Faculty Mentor: Dr. D’Juan Farmer
Truman is a rising senior at the University of California, Santa Cruz (UCSC) who studies Molecular, Cellular, and Developmental (MCD) Biology. Since June 2022, he has been conducting undergraduate research in the Chamorro-Garcia lab of the Department of Microbiology and Environmental Toxicology at UCSC, where he has been studying the obesogenic effects that microfiber microplastics have on mesenchymal stem cells as they differentiate into adipocytes.
This summer, through the Amgen Scholars Program, Truman is working with the Farmer lab of the Department of MCD Biology at the University of California, Los Angeles, which studies the inter- and intracellular mechanisms that drive and disrupt craniofacial development. Truman is attempting to visualize the periosteal dura, a layer of the meningeal tissues that sits just below the calvaria of the skull. While it is understood that the meninges are integral to proper calvaria bone growth and function, it is unclear if the periosteal dura has a supporting role in this interaction. Truman and the Farmer lab hope that visualizing the periosteal dura throughout the stages of zebrafish development will elucidate the relationship the periosteal dura has between the calvaria and the rest of the meningeal tissues.
Truman would like to thank Dr. Farmer, Benny Mosquera, Katie Wilhem, and the Amgen Foundation for investing their time, energy, and resources in him and his summer research project. Their support has made for an unforgettable summer of scientific and self-discovery.
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Alyssa Pama
2022-2023
Home University: California Polytechnic State University in San Luis Obispo
Class: senior
Major: Biochemistry
Faculty Mentor: Dr. Daniel Kamei
Alyssa is a rising senior at Cal Poly in San Luis Obispo studying Biochemistry. At Cal Poly, Alyssa works in Dr. Andres Martinez’s research laboratory and has been testing enzyme stabilizers on paper for applications on point-of-care (POC) microfluidic paper-based devices.
At UCLA, Alyssa is conducting research under Dr. Daniel T. Kamei in the Department of Bioengineering. The Kamei Laboratory focuses on the development of novel POC diagnostics and was the first to apply aqueous two-phase systems (ATPS) to lateral-flow immunoassays (LFAs). ATPSs can be used to pre-concentrate a target biomarker into a smaller volume to improve the sensitivity of LFAs. Previous studies done by the Kamei Laboratory have shown that polymer-salt ATPSs can decrease the LFA limit of detection by 10-fold. However, because polymer-polymer ATPSs are more temperature resistant than polymer-salt ATPSs, they are more applicable at the POC. Alyssa’s current project is to optimize the use of a polymer-polymer ATPS composed of polyethylene glycol and dextran for use with LFAs. Since dextran is too viscous to efficiently flow across a LFA, the enzyme dextranase will be used to cleave dextran into smaller subunits. This should improve the flow of dextran by decreasing viscosity and consequently, increase the sensitivity of the LFA.
Alyssa would like to thank Dr. Daniel Kamei, Frances Nicklen, and all of the members of the Kamei Laboratory for being so welcoming and helping her grow as a scientist. She would also like to thank the Amgen Foundation for funding this amazing summer research opportunity.
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Sean Pascoe
2022-2023
Home University: Northwestern University
Class: senior
Major: Biological Sciences
Faculty Mentor: Dr. Aaron Meyer
Originally from Tucson, AZ, Sean is a rising senior at Northwestern University studying biology with minors in Data Science and French. At Northwestern, Sean works in the lab of Dr. Thomas Hope, where he has highlighted trends in PET/CT and vaccine trial data to better understand the dynamics of HIV infection. He is passionate about science education, as well as finding ways to integrate computational biology work with the discovery of niche coffee shops in Chicago.
At UCLA, Sean is working in the Meyer lab to decipher complex immune cell relationships within and between patients with systemic lupus erythematosus (SLE). Single cell RNA sequencing (scRNA-seq) is used to profile heterogeneity in biological systems, but current analysis strategies lack the ability to robustly differentiate patient-to-patient variation when comparing samples across many different individuals. To profile multi-experiment scRNA-seq data, the Meyer lab has adapted PARAFAC2, a multidimensional variance decomposition method, to first align data between experiments and subsequently perform dimensionality reduction. PARAFAC2 enables a 3-dimensional approach to linear decompositions of scRNA-seq data, and is thus better able to model natural variation. This summer, Sean is applying this method to 1.2 million cells derived from 260 patients, with the goal of using PARAFAC2 to strengthen understanding of the cell-level changes that contribute to the SLE disease state.
Sean would like to thank Andrew Ramirez, Dr. Meyer, and the rest of the Meyer lab for their invaluable support throughout the summer, as well as the Amgen Scholars program at UCLA for this opportunity.
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Aishini Singh
2022-2023
Home University: UC Davis
Class: senior
Major: Biochemistry and Molecular Biology
Faculty Mentor: Dr. Anthony Covarrubias
Aishini is a rising senior at UC Davis. There, she conducts research in the Ori-McKenney Lab on the phosphorylation of microtubule-associated protein tau following traumatic brain injury and has investigated the underlying dopaminergic and serotonergic neuronal activity in the development of tau pathology.
At UCLA, Aishini works under Dr. Anthony Covarrubias in the Department of Microbiology, Immunology, and Molecular Genetics to conduct research on cell cycle regulators p21 and p16 in senescent macrophages. Cellular senescence, a cell fate characterized by irreversible cell-cycle arrest in response to various stressors, is an emerging driver of aging and aging-associated diseases. The Covarrubias lab has identified macrophages as a new cell type that can undergo senescence. Subsequent tests performed by the lab indicate an increase in senescent marker p21 in senescent macrophages, but a decrease in senescent marker p16. Aishini’s project in the Covarrubias lab thus entails determining the role of p21 and p16 in the senescent programming of macrophages. She is using CRISPR/Cas9 genome editing to generate p16 and p21 knock-outs in primary macrophages. Then, following treatment with irradiation, which is known to induce senescence through DNA damage, she will conduct various assays on these cells to test the effects on senescent programming. She hypothesizes that p21, but not p16, is important for macrophage senescent programming, and overall aims to identify markers of cellular senescence in resident macrophages.
Aishini would like to thank the entire Covarrubias lab, especially Dr. Anthony Covarrubias and graduate student Grasiela Torres, and the Amgen Foundation for this opportunity to enhance her skills as a researcher.
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Elise Tahti
2022-2023
Home University: Western Washington University
Class: senior
Major: Biochemistry
Faculty Mentor: Dr. Lily Wu
Elise is a rising senior at Western Washington University, where she conducts undergraduate research in Dr. Jeanine Amacher’s structural biology and protein biochemistry lab. While in the Amacher lab, Elise has studied protein-peptide interactions in a variety of proteins/domains – including Sortase A enzymes, SH3 domains, and PDZ domains – and recently published a first-author journal article.
At UCLA, Elise works for Dr. Lily Wu in the Department of Molecular and Medical Pharmacology; her focus for the summer is to investigate the inhibitory effect of statins on triple-negative breast cancer (TNBC) cell lines. Statins are commonly used to lower blood cholesterol by inhibiting HMG CoA reductase but have been seen to pleiotropically inhibit a variety of aggressive cancer types, including TNBC. TNBC does not exhibit overexpression of human epidermal growth factor receptor 2 (HER2) and does not express estrogen or progesterone receptors (ER and PR). Two of the most common therapies for breast cancer are anti-HER2 and endocrine-based and are therefore not effective against TNBC. Statins present a possible therapeutic method for treating this type of cancer, but not much is currently known about the mechanism/pathways at play. This project aims to gain insight into the inhibitory action of statins in this context, particularly as it relates to epithelial-to-mesenchymal transition, metastasis, and hypoxia.
Elise is very thankful for this wonderful opportunity to work with everyone in the Wu lab and for the support of both the Amgen Foundation and UCLA.
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Mark Hiroshi Sugita Troftgruben
2022-2023
Home University: California Polytechnic State University, San Luis Obispo
Class: senior
Major: Biological Sciences
Faculty Mentor: Dr. Peter Clark
Mark is a rising senior at Cal Poly, San Luis Obispo, where he conducts organic synthesis research in Dr. Scott Eagon’s medicinal chemistry lab. In the “E-Lab,” he attempts to synthesize small molecule benzoxazole inhibitors of casein kinase 2 (CK2), an understudied kinase that phosphorylates over 700 different residues and is known to be upregulated in numerous types of cancers.
This summer at UCLA, Mark works for Dr. Peter Clark in the Department of Molecular and Medical Pharmacology where his focus is on expressing Hexokinase 2 (HK2) and both identifying and characterizing potential small molecule inhibitors of it. Elevated glucose consumption via aerobic glycolysis—known as the Warburg Effect—is fundamental to nearly all cancers and hexokinase catalyzes the first rate-limiting step of glycolysis. Given this and the fact that HK1 and HK2 provide redundant protection from loss of function for either of these isoforms of hexokinase, the Clark Lab aims to selectively inhibit HK1– HK2+ cancers (40 percent of hepatocellular carcinoma cases) by identifying small molecule inhibitors of HK2. Using enzymatic and thermal shift curve assays, Mark looks to better understand the mechanisms behind which small molecules identified from high-throughput screening inhibit HK2.
Mark would like to thank Dr. Clark and his mentor, Stefani Perez, as well as Ph.D. candidate K.M. Ryan and undergraduate Rachel Jiang for their wonderful mentorship and support. He would also like to thank UCLA and the Amgen Foundation for the opportunity to explore a different field of research this summer.
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Matthew Williams
2022-2023
Home University: Oregon State University
Class: senior
Major: Microbiology
Faculty Mentor: Dr. Lili Yang
Matthew is a rising senior majoring in microbiology at Oregon State University. There, he works in Dr. Hannah Rowe’s lab where he studies interactions between the microbiome and influenza A virus that contribute to the stabilization and propagation of viral infections.
As an Amgen scholar at UCLA Matthew works in Dr. Lili Yang’s lab in the department of microbiology, immunology and molecular genetics. The Yang lab focuses on developing novel cancer immunotherapies by studying the mechanisms behind antitumor immunity. Matthew’s project specifically focuses on the effects of creatine supplementation on the cellular activation of dendritic cells within the energy-poor tumor microenvironment (TME). Previous research has shown that creatine is important for preventing an “exhausted state” in T-cells within the TME and that creatine supplementation results in decreased tumor growth in mouse melanoma models. However, the effects of creatine on other members of the tumor microenvironment is largely understudied. The goal of Matthew’s work in the Yang lab is to look for activation markers in non-treated, creatine supplemented and ATP supplemented dendritic cells in order to gain a better understanding of how creatine affects the cellular activation of dendritic cells and how it may play a role in disease detection and immune activation.
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Alexander Wu
2022-2023
Home University: UCLA
Class: senior
Major: Neuroscience and Design | Media Arts
Faculty Mentor: Dr. Sotiris Masmanidis
Alex is a rising senior at UCLA majoring in Neuroscience and Design | Media Arts. Since his sophomore year, he has been performing research with Dr. Sotiris Masmanidis’s Lab at UCLA to study the neural mechanisms involved in reward learning and movement.
During the UCLA Amgen Scholars Program, Alex is investigating the behavioral and electrophysiological characteristics of gait and locomotion in healthy and Parkinson-like model mice. Gait impairments are characteristic of cognitive decline and some neurodegenerative disorders such as Parkinson’s Disease (PD). PD pathology includes symptoms such as dopaminergic neuron death in neural circuits involving the basal ganglia and implicated in proper movement modulation. Preliminary data from the Masmanidis Lab has demonstrated basal ganglia neural encoding for limb gait parameters in healthy mice and disruption of such neural firing in neurotoxin Parkinson-like mice models. However, such neurotoxin models, such as induced dopaminergic neuron death with 6-hydroxydopamine, do not fully characterize PD pathology, such as development of misfolded α-synuclein aggregates including Lewy bodies and Lewy neurites. Using computational ethology for behavioral gait tracking and electrophysiological recordings of the basal ganglia, Alex is exploring gait in healthy mice and mice injected with pathological α-synuclein in the basal ganglia to quantify the behavioral and neurological deficits associated with PD.
Alex would like to thank the UCLA Amgen Scholars Program, the Amgen Foundation, and the Masmanidis Lab for the opportunity and their support in his growth as a researcher and scientist.
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Jerry Zhang
2022-2023
Home University: Amherst College
Class: junior
Major: Biochemistry and Economics
Faculty Mentor: Dr. Neil Harris
Jerry is a junior at Amherst College pursuing majors in Biochemistry and Economics. While at Amherst College, he conducted research with Professor Lara Halaoui, studying the effects of dopant rare-earth metals on the electrocatalysis of the oxygen evolution reaction for water splitting.
As an Amgen Scholar at UCLA, Jerry is working in Dr. Neil Harris’ lab in the department of neurosurgery. His project in the Harris lab involves a collaboration with the Dr. Ina Wanner lab to investigate neurodegeneration in brain cells following repetitive minor traumatic brain injuries (TBI) using immunofluorescence. There are many studies showing that moderate and severe TBI leads to changes in the brain’s pathology and cognition in both the short and long-term. However, recent findings suggest that repetitive minor TBI also has short and long-term effects. In the Harris lab, Jerry will undergo an explorative study to determine where and to quantify how much neurodegeneration is occurring in the brain following repeated minor TBI in the acute phase. He will do this by staining mouse brains with antibodies that detect neurodegeneration and imaging them. This study has great relevance to contact athletes who often encounter multiple mild brain traumas throughout a season of play. Furthermore, it will further research on the early detection of and cures for Alzheimer’s Disease.
Jerry would like to thank the Amgen Foundation, the Harris Lab, and the Wanner Lab for their extensive mentorship and generous support in his exploration into the world of science.
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